annotate_with_NCBI_taxid: Retrieve the taxonomic data for a given NCBI taxon ID using a...
In currocam/HMMERutils: HMMERutils
View source: R/annotate_with_ncbi.R
annotate_with_NCBI_taxid R Documentation
Retrieve the taxonomic data for a given NCBI
taxon ID using a local database or as remote data sources.
Description
Retrieve the taxonomic data for a given NCBI
taxon ID using a local database or as remote data sources.
Usage
annotate_with_NCBI_taxid(taxid, rank_vc = NULL, mode = "remote")
Arguments
taxid
A character or numeric vector
containing the target NCBI taxon ID.
rank_vc
A character vector containing the
desired taxonomic ranks. If empty, all available
taxonomic ranges will be retrieved.
mode
A character vector, if "local" will
use a local database instead of remote resources.
You will not have to download the database but it is slower.
Value
A DataFrame with columns taxid and taxonomic ranks.
Examples
annotate_with_NCBI_taxid(7955, mode = "remote")
currocam/HMMERutils documentation built on Feb. 15, 2023, 8:41 p.m.
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View source: R/annotate_with_ncbi.R
| annotate_with_NCBI_taxid | R Documentation |
Retrieve the taxonomic data for a given NCBI taxon ID using a local database or as remote data sources.
Description
Retrieve the taxonomic data for a given NCBI taxon ID using a local database or as remote data sources.
Usage
annotate_with_NCBI_taxid(taxid, rank_vc = NULL, mode = "remote")
Arguments
taxid |
A character or numeric vector containing the target NCBI taxon ID. |
rank_vc |
A character vector containing the desired taxonomic ranks. If empty, all available taxonomic ranges will be retrieved. |
mode |
A character vector, if "local" will use a local database instead of remote resources. You will not have to download the database but it is slower. |
Value
A DataFrame with columns taxid and taxonomic ranks.
Examples
annotate_with_NCBI_taxid(7955, mode = "remote")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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