pairwise_sequence_identity_heatmap: Plot a heatmap with the pairwise identity percentages.
In currocam/HMMERutils: HMMERutils
View source: R/pairwise_alignment.R
pairwise_sequence_identity_heatmap R Documentation
Plot a heatmap with the pairwise identity percentages.
Description
Plot a heatmap with the pairwise identity percentages.
Usage
pairwise_sequence_identity_heatmap(data, annotation = NULL)
Arguments
data
A Data Frame obtained from pairwise_alignment_sequence_identity.
annotation
A character vector with as many elements as sequences.
Value
A ggplot object
Examples
data(phmmer_2abl)
pairwise_alignment_sequence_identity(
seqs = phmmer_2abl$hits.fullfasta[6:10],
aln_type = "overlap",
pid_type = "PID2"
) %>%
pairwise_sequence_identity_histogram()
currocam/HMMERutils documentation built on Feb. 15, 2023, 8:41 p.m.
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View source: R/pairwise_alignment.R
| pairwise_sequence_identity_heatmap | R Documentation |
Plot a heatmap with the pairwise identity percentages.
Description
Plot a heatmap with the pairwise identity percentages.
Usage
pairwise_sequence_identity_heatmap(data, annotation = NULL)
Arguments
data |
A Data Frame obtained from pairwise_alignment_sequence_identity. |
annotation |
A character vector with as many elements as sequences. |
Value
A ggplot object
Examples
data(phmmer_2abl)
pairwise_alignment_sequence_identity(
seqs = phmmer_2abl$hits.fullfasta[6:10],
aln_type = "overlap",
pid_type = "PID2"
) %>%
pairwise_sequence_identity_histogram()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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