API for currocam/toolkit4pySCA
A set of useful functions for performing an Statistical Coupling Analysis from scratch in R and using pySCA
| Global functions | |
|---|---|
| %>% | Man page |
| SCA_correlation_matrix_data | Man page Source code |
| SCA_positional_coevolution_matrix_components_data | Man page Source code |
| SCA_positional_coevolution_matrix_eigenvalues_data | Man page Source code |
| download_tax_from_ncbi | Man page Source code |
| eigenspectrum_SCA_positional_coevolution_matrix_plot | Man page Source code |
| extract_tidy_df_from_hmmer | Man page Source code |
| extract_tidy_domains_from_xml | Man page Source code |
| extract_tidy_hits_from_xml | Man page Source code |
| extract_tidy_stats_from_xml | Man page Source code |
| global_similarity_matrix_data | Man page Source code |
| global_similarity_matrix_heatmap | Man page Source code |
| import_pySCA_module_using_reticulate | Man page Source code |
| pairwise_sequence_identities_data | Man page Source code |
| pairwise_sequence_identities_hist | Man page Source code |
| phmmer_HBG2_HUMAN | Man page |
| position_specific_conservation_data | Man page Source code |
| position_specific_conservation_plot | Man page Source code |
| post_request_to_phmer | Man page Source code |
| pySCA_HBG2_HUMAN | Man page |
| quick_AA_search_using_phmmer | Man page Source code |
| read_pySCA_pickle | Man page Source code |
| sequence_correlation_matrix_projections_data | Man page Source code |
| sequence_correlation_matrix_projections_plot | Man page Source code |
| write_sectors_for_pymol | Man page Source code |
