download_tax_from_ncbi: Create a dataframe with taxonomic information extracted from...

In currocam/toolkit4pySCA: A set of useful functions for performing an Statistical Coupling Analysis from scratch in R and using pySCA

Create a dataframe with taxonomic information extracted from NCBI.

Description

Create a dataframe with taxonomic information extracted from NCBI.

Usage

download_tax_from_ncbi(
  taxid,
  rank_vc = c("superkingdom", "kingdom", "subphylum", "superclass", "class",
    "suborder", "order", "family", "subfamily", "genus")
)

Arguments

taxid	A character vector containing Uniprot taxonomy id
rank_vc	A character vector containing Taxonomic rank columns

Value

Dataframe

Examples

## Not run: 
#sequential
download_xml_from_phmer(body_list =
    list(seqdb = "pdb",seq = '>Seq\nKLRVLGYH'))

## End(Not run)

currocam/toolkit4pySCA documentation built on April 7, 2022, 8:17 p.m.