extract_tidy_stats_from_xml: extract_tidy_stats_from_xml

In currocam/toolkit4pySCA: A set of useful functions for performing an Statistical Coupling Analysis from scratch in R and using pySCA

extract_tidy_stats_from_xml

Description

extract_tidy_stats_from_xml

Usage

extract_tidy_stats_from_xml(xml.document)

Arguments

xml.document

A xml_document downloaded from HMMER that contain stats

Value

A tidy data.frame containing available stats' information in xml_document.

• nhits: The number of hits found above reporting thresholds

• Z: The number of sequences or models in the target database

• domZ: The number of hits in the target database

• nmodels: The number of models in this search

• nincluded: The number of sequences or models scoring above the significance threshold

• nreported: The number of sequences or models scoring above the reporting threshold

Examples

## Not run: 
read_xml("2abl_A_pdb.xml") %>%
    extract_tidy_stats_from_xml()

## End(Not run)

currocam/toolkit4pySCA documentation built on April 7, 2022, 8:17 p.m.