addSignificanceGroup: Function to add 3 group significance group label to fold...

In cusom/CUSOM.ShinyHelpers: CU School of Medicine Helper Functions for Shiny Applications

Function to add 3 group significance group label to fold change dataframe

Description

Function to add 3 group significance group label to fold change dataframe

Usage

addSignificanceGroup(
  .data,
  foldChangeVar,
  significanceVariable,
  adjustedInd,
  significanceThreshold,
  originalSignificanceThreshold
)

Arguments

.data	fold change dataframe
foldChangeVar	name of fold change column
significanceVariable	name of significance variable column (p-value, q-value, etc)
adjustedInd	logical - indicating whether or not a multiple hypothesis correction was applied. When TRUE, "q" will is used. When FALSE "p" is used.
significanceThreshold	numeric - value indicating threshold at which an observation in the significanceVariable coulumn is considered statistically significant.
originalSignificanceThreshold	numeric - value indicating un-transformed threshold at which an observation in the significanceVariable coulumn is considered statistically significant.

Value

returns labels and colors for 3 signficance groups (up, down, not significant)

cusom/CUSOM.ShinyHelpers documentation built on Oct. 23, 2023, 6:50 a.m.