getDefaultVolcanoAnnotations: volcano plot Plotly function to get standard volcano...

In cusom/CUSOM.ShinyHelpers: CU School of Medicine Helper Functions for Shiny Applications

volcano plot Plotly function to get standard volcano annotations

Description

volcano plot Plotly function to get standard volcano annotations

Usage

getDefaultVolcanoAnnotations(
  maxFoldChange,
  upRegulatedText,
  significanceThreshold,
  adjustedInd = FALSE,
  includeThresholdLabel = TRUE
)

Arguments

maxFoldChange	- numeric - indicates the max value along the x axis for the plot (fold change) - helps anchor the annotations along the x-axis
upRegulatedText	- text to use for "up regulated" groups – down regulated text will simply replace "up" with "down"
significanceThreshold	- numeric - significance threshold
adjustedInd	- logical - indicates if the significance variable has been adjusted with a multiple hypothesis correction
includeThresholdLabel	- logical - whether to include arrow with significance threshold

Value

list of lists of plotly annotation objects – up regulated arror at top of plot (with up regulated text) – down regulated arrow at the top of plot – p value threshold with "p or q < threshold" text and up arrow

cusom/CUSOM.ShinyHelpers documentation built on Oct. 23, 2023, 6:50 a.m.