getCorrelationVolcanoAnnotations: gets all possible correlation volcano plot annotations in a...

In cusom/CUSOM.ShinyHelpers: CU School of Medicine Helper Functions for Shiny Applications

gets all possible correlation volcano plot annotations in a single call. Combines list output from default and arrow annotations. similar to getVolcanoAnnotations, geared towards specific annotations for correlation volcano plots.

Description

gets all possible correlation volcano plot annotations in a single call. Combines list output from default and arrow annotations. similar to getVolcanoAnnotations, geared towards specific annotations for correlation volcano plots.

Usage

getCorrelationVolcanoAnnotations(
  .data,
  foldChangeVar,
  significanceVariable,
  selected,
  arrowLabelTextVar,
  ...
)

Arguments

.data	dataframe containing fold change data along with selecte point indicator "selected_"
foldChangeVar	fold change variable
significanceVariable	statistical significance variable
selected	selected indicator column
arrowLabelTextVar	name of column in dataframe to pull for arrow annotation text
...	- additiaonal named arguments to include in calls to other functions.

Value

returns list of lists of annotation objects annotations - list of default volcano annotations shapes - list of shapes - defaults to dotted line separating significance groups arrow - list of arrow annotations to highlight points on volcano plot parameters - metatdata used to generate annotation lists

cusom/CUSOM.ShinyHelpers documentation built on Oct. 23, 2023, 6:50 a.m.