Man pages for cwarden45/COHCAP
CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
| COHCAP.annotate | Annotation for CpG Sites |
| COHCAP.avg.by.island | CpG Island Differential Methylation Analysis (Average by... |
| COHCAP.avg.by.site | CpG Island Differential Methylation Analysis (Average by Site... |
| COHCAP.BSSeq.preprocess | Preprocessing for Targeted BS-Seq data |
| COHCAP.BSSeq_V2.methyl.table | Create Percent Methylation Table from Bismark Coverage files... |
| COHCAP.denovo | De-Novo Identification of Differentially Methylated CpG Site... |
| COHCAP.integrate.avg.by.island | Integration with Gene Expression Data(Average by Island... |
| COHCAP.integrate.avg.by.site | Integration with Gene Expression Data(Average by Site... |
| COHCAP.qc | DNA Methylation Quality Control Statistics |
| COHCAP.reformatFinalReport | Prepare COHCAP beta file from Illumina GenomeStudio Final... |
| COHCAP.site | CpG Site Differential Methylation Analysis |
