Man pages for cwarden45/COHCAP
CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data

COHCAP.annotateAnnotation for CpG Sites
COHCAP.avg.by.islandCpG Island Differential Methylation Analysis (Average by...
COHCAP.avg.by.siteCpG Island Differential Methylation Analysis (Average by Site...
COHCAP.BSSeq.preprocessPreprocessing for Targeted BS-Seq data
COHCAP.BSSeq_V2.methyl.tableCreate Percent Methylation Table from Bismark Coverage files...
COHCAP.denovoDe-Novo Identification of Differentially Methylated CpG Site...
COHCAP.integrate.avg.by.islandIntegration with Gene Expression Data(Average by Island...
COHCAP.integrate.avg.by.siteIntegration with Gene Expression Data(Average by Site...
COHCAP.qcDNA Methylation Quality Control Statistics
COHCAP.reformatFinalReportPrepare COHCAP beta file from Illumina GenomeStudio Final...
COHCAP.siteCpG Site Differential Methylation Analysis
cwarden45/COHCAP documentation built on Oct. 14, 2018, 3:06 a.m.