cwarden45/COHCAP: CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data

This package provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options. Discussion Group:

Getting started

Package details

AuthorCharles Warden <[email protected]>, Yate-Ching Yuan <[email protected]>, Xiwei Wu <[email protected]>
Bioconductor views DNAMethylation DifferentialMethylation Epigenetics MethylSeq Microarray
MaintainerCharles Warden <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
cwarden45/COHCAP documentation built on Jan. 3, 2019, 10:25 p.m.