cwarden45/COHCAP: CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data

COHCAP (pronounced "co-cap") provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options. Discussion Group: https://sourceforge.net/p/cohcap/discussion/bioconductor/

Getting started

Package details

AuthorCharles Warden <cwarden@coh.org>, Yate-Ching Yuan <yyuan@coh.org>, Xiwei Wu <xwu@coh.org>
Bioconductor views DNAMethylation DifferentialMethylation Epigenetics MethylSeq Microarray
MaintainerCharles Warden <cwarden@coh.org>
LicenseGPL-3
Version1.35.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("cwarden45/COHCAP")
cwarden45/COHCAP documentation built on May 4, 2020, 6:32 p.m.