Man pages for cwatson/brainGraph
Graph Theory Analysis of Brain MRI Data

aal116Coordinates for data from the AAl116 atlas
aal2.120Coordinates for data from the AAL2 atlas
aal2.94Coordinates for data from the AAL2 atlas
aal90Coordinates for data from the AAl90 atlas
analysis_random_graphsPerform an analysis with random graphs for brain MRI data
apply_thresholdsThreshold additional set of matrices
assign_lobesGive vertices in a graph a _lobe_ attribute.
auc_diffDifference in the area-under-the-curve of two vectors
boot_globalBootstrapping for global graph measures
brainGraph_GLMRun linear models at each vertex of a graph
brainGraph_GLM_designCreate a design matrix for linear model analysis
brainGraph_GLM_fitFit linear models and calculate statistics
brainGraph_initInitialize variables for further use in brainGraph
brainsuiteCoordinates for data from BrainSuite atlas
centr_betw_commCalculate communicability betweenness centrality
centr_levCalculate a vertex's leverage centrality
check.residCheck model residuals for each brain region
choose.edgesSelect edges for re-wiring.
coeff_varCalculate coefficient of variation
color_vertices_edgesColor graph vertices and edges
communicabilityCalculate communicability
contract_brainGraphContract graph vertices based on brain lobe and hemisphere
cor.diff.testCalculate the p-value for differences in correlation...
corr.matrixCalculate correlation matrix and threshold
count_edgesCount number of edges of a brain graph
craddock200Coordinates for data from the Craddock200 atlas
create_matsCreate connection matrices for tractography or fMRI data
delete_all_attrDelete all attributes of a graph
destrieuxCoordinates for data from the Destrieux atlas
destrieux.scgmCoordinates for data from the Destrieux atlas
dkCoordinates for data from the Desikan-Killiany atlas
dk.scgmCoordinates for data from the Desikan-Killiany atlas
dktCoordinates for data from the Desikan-Killiany-Tourville...
dkt.scgmCoordinates for data from the Desikan-Killiany-Tourville...
dosenbach160Coordinates for data from the Dosenbach160 atlas
edge_asymmetryCalculate an asymmetry index based on edge counts
efficiencyCalculate graph global, local, or nodal efficiency
get.residLinear model residuals across brain regions
graph_attr_dtCreate a data table with graph global measures
hoa112Coordinates for data from Harvard-Oxford atlas
individ_contribApproaches to estimate individual network contribution
lpba40Coordinates for data from the LONI probabilistic brain atlas
make_ego_brainGraphCreate a graph of the union of multiple vertex neighborhoods
make_empty_brainGraphCreate an empty graph with attributes for brainGraph
mtpcMulti-threshold permutation correction
NBSNetwork-based statistic for brain MRI data
permute.groupPermutation test for group difference of graph measures
plot_bootPlot global graph measures with shaded regions calculated...
plot_brainGraphPlot a brain graph with a specific spatial layout
plot_brainGraph_guiGUI for plotting graphs overlaid on an MNI152 image or in a...
plot_brainGraph_listWrite PNG files for a list of graphs
plot_brainGraph_mniDraw an axial or sagittal slice of the MNI152 T1 image
plot_brainGraph_multiSave PNG of three views of a brain graph
plot_corr_matPlot a correlation matrix
plot_globalPlot global graph measures across densities
plot_group_meansPlot group distributions of volumetric measures for a given...
plot_perm_diffsCalculate permutation p-values and plot group differences
plot_rich_normPlot normalized rich club coefficients against degree...
plot_vertex_measuresPlot vertex-level graph measures at a single density or...
rich_club_attrsAssign graph attributes based on rich-club analysis
rich_club_coeffCalculate the rich club of a graph
rich_club_normCalculate the normalized rich club coefficient
rich_coreCalculate the rich core of a graph
robustnessAnalysis of network robustness
rotationApply a rotation matrix to a set of points
s_coreCalculate the s-core of a network
set_brainGraph_attrSet graph, vertex, and edge attributes common in MRI analyses
sim.rand.graph.clustSimulate a random graph with given degree sequence and...
sim.rand.graph.parSimulate N random graphs w/ same clustering and degree...
small.worldCalculate graph small-worldness
spatial_distCalculate Euclidean distance of edges and vertices
symmetrize_matsCreate a symmetric matrix
update_brainGraph_guiFunction to dynamically plot a graph
vec.transformTransform a vector to have a different range
vertex_attr_dtCreate a data table with graph vertex measures
vertex_rolesGateway coefficient, participation coefficient, and...
vulnerabilityCalculate graph vulnerability
write_brainnetWrite files to be used for visualization with BrainNet Viewer
xfm.weightsTransform edge weights
cwatson/brainGraph documentation built on Sept. 16, 2017, 7:52 a.m.