API for cwatson/brainGraph
Graph Theory Analysis of Brain MRI Data

Global functions
.onLoad Source code
Atlas Helpers Man page
Attributes Man page
BC.CI2 Source code
Bootstrapping Man page
Brain Atlases Man page
Count Edges Man page
Creating_Graphs Man page
Creating_Graphs_GLM Man page
Extract.brainGraphList Man page
Extract.brainGraph_resids Man page
Extract.corr_mats Man page
GLM Man page
GLM basic info Man page
GLM design Man page
GLM fits Man page
GLM helpers Man page
GLM influence measures Man page
GLM model selection Man page
GLM statistics Man page
Graph Data Tables Man page
Graph Distances Man page
IndividualContributions Man page
Inverse Man page
Matrix utilities Man page
Mediation Man page
NBS Man page Source code
Plotting GLM graphs Man page
Random Graphs Man page
Residuals Man page
Rich Club Man page
Utility functions Man page
Vertex Roles Man page
[.bg_GLM Man page
[.brainGraphList Man page
[.brainGraph_resids Man page
[.corr_mats Man page
`[.bg_GLM` Source code
`[.brainGraphList` Source code
`[.brainGraph_resids` Source code
`[.corr_mats` Source code
aal116 Man page
aal2.120 Man page
aal2.94 Man page
aal90 Man page
add_buttons Source code
add_check Source code
add_combo Source code
add_entry Source code
add_frame Source code
add_nans Man page Source code
add_orient_hemi Source code
add_scroll_window Source code
all.identical Source code
analysis_random_graphs Man page Source code
anova.bg_GLM Man page Source code
aop Man page Source code
apply_thresholds Man page Source code
args_as_list Source code
as_atlas Man page Source code
as_brainGraphList Man page Source code
auc_diff Man page Source code
auc_diff_perm Source code
auc_rle Source code
bg_to_mediate Man page Source code
boot_mediate Source code
brainGraph Man page
brainGraph-methods Man page
brainGraph-options Man page
brainGraph-package Man page
brainGraphList Man page
brainGraph_GLM Man page Source code
brainGraph_GLM_design Man page Source code
brainGraph_boot Man page Source code
brainGraph_mediate Man page Source code
brainGraph_permute Man page Source code
brainnetome Man page
brainsuite Man page
by_hemi Source code
case.names.NBS Man page
case.names.bg_GLM Man page Source code
case.names.brainGraph_resids Man page Source code
case.names.mtpc Man page
centr_betw_comm Man page Source code
centr_lev Man page Source code
check_degree Man page Source code
check_if_singular Man page Source code
check_sID Man page Source code
check_strength Man page Source code
check_weights Man page Source code
choose.edges Man page Source code
coef.bg_GLM Man page Source code
coef_se Source code
coeff_determ Man page Source code
coeff_table Man page Source code
coeff_var Man page Source code
coeff_var.array Source code
coeff_var.default Man page Source code
coeff_var.matrix Source code
colMax Man page Source code
colMaxAbs Man page Source code
colMin Man page Source code
communicability Man page Source code
confint.bg_GLM Man page Source code
contract_brainGraph Man page Source code
contrast_names Man page Source code
cooks.distance.bg_GLM Man page Source code
cor.diff.test Man page Source code
corr.matrix Man page Source code
count_homologous Man page Source code
count_inter Man page Source code
covratio.bg_GLM Man page Source code
craddock200 Man page
create_atlas Man page Source code
create_dummy_vars Source code
create_mats Man page Source code
cxtxfun_3d Man page Source code
delete_all_attr Man page Source code
destrieux Man page
destrieux.scgm Man page
deviance.bg_GLM Man page Source code
df.residual.NBS Man page
df.residual.bg_GLM Man page Source code
df.residual.mtpc Man page
dfbeta.bg_GLM Man page Source code
dfbetas.bg_GLM Man page Source code
dffits.bg_GLM Man page Source code
diag_sq Man page Source code
dir2files Man page Source code
dk Man page
dk.scgm Man page
dkt Man page
dkt.scgm Man page
dosenbach160 Man page
edge_asymmetry Man page Source code
edge_spatial_dist Man page Source code
efficiency Man page Source code
extractAIC.bg_GLM Man page Source code
f_beta_3d Source code
f_beta_3d_g Source code
f_beta_m Source code
fastLmBG Man page Source code
fastLmBG_3d Man page Source code
fastLmBG_3dY Man page Source code
fastLmBG_3dY_1p Man page Source code
fastLmBG_f Man page Source code
fastLmBG_f_rand Source code
fastLmBG_f_rand_3d Source code
fastLmBG_t Man page Source code
fastLmBG_t_rand Source code
fastLmBG_t_rand_3d Source code
fastquant Source code
fitted.bg_GLM Man page Source code
formula.NBS Man page Source code
formula.bg_GLM Man page Source code
formula.mtpc Man page
gateway_coeff Man page Source code
get.resid Man page Source code
get_int Source code
get_metadata Man page Source code
get_rand_attrs Man page Source code
get_rle_inds Source code
get_screen_size Source code
get_thresholds Man page Source code
glm_data_table Man page Source code
gordon333 Man page
graph_attr_dt Man page Source code
graph_attr_perm Source code
groups.brainGraphList Man page Source code
groups.brainGraph_resids Man page Source code
groups.corr_mats Man page Source code
guess_atlas Man page Source code
hatvalues.bg_GLM Man page Source code
hcp_mmp1.0 Man page
help_win Source code
hoa112 Man page
hubness Man page Source code
import_scn Man page Source code
influence.bg_GLM Man page Source code
inv Man page Source code
inv.array Man page Source code
inv.list Man page Source code
inv.matrix Man page Source code
inv.qr Man page Source code
is.brainGraph Man page Source code
is.brainGraphList Man page Source code
is_binary Man page Source code
kill_others Source code
labels.NBS Man page
labels.bg_GLM Man page Source code
labels.mtpc Man page
logLik.bg_GLM Man page Source code
loo Man page Source code
lpba40 Man page
make_auc_brainGraph Man page Source code
make_brainGraph Man page Source code
make_brainGraph.bg_mediate Man page Source code
make_brainGraph.igraph Man page Source code
make_brainGraph.matrix Man page Source code
make_brainGraphList Man page Source code
make_brainGraphList.NBS Man page Source code
make_brainGraphList.array Man page Source code
make_brainGraphList.bg_GLM Man page Source code
make_brainGraphList.corr_mats Man page Source code
make_brainGraphList.mtpc Man page Source code
make_ego_brainGraph Man page Source code
make_empty_brainGraph Man page Source code
make_graphs_perm Source code
make_intersection_brainGraph Man page Source code
matrix2list Man page Source code
maxfun Man page Source code
mean_distance_wt Man page Source code
mtpc Man page Source code
nobs.NBS Man page
nobs.bg_GLM Man page Source code
nobs.brainGraphList Man page Source code
nobs.brainGraph_resids Man page Source code
nobs.mtpc Man page
normalize_mats Source code
nregions Man page Source code
nregions.NBS Man page Source code
nregions.bg_GLM Man page Source code
nregions.brainGraph_resids Man page Source code
nregions.corr_mats Man page Source code
nregions.mtpc Man page
outer_vec Man page Source code
pad_zeros Man page Source code
part_coeff Man page Source code
partition Man page Source code
patterns Source code
permute_graph_foreach Source code
permute_other_foreach Source code
permute_vertex_foreach Source code
pinv Man page Source code
plot.IC Man page Source code
plot.bg_GLM Man page Source code
plot.brainGraph Man page Source code
plot.brainGraphList Man page Source code
plot.brainGraph_GLM Man page Source code
plot.brainGraph_NBS Man page Source code
plot.brainGraph_boot Man page Source code
plot.brainGraph_mediate Man page Source code
plot.brainGraph_mtpc Man page Source code
plot.brainGraph_permute Man page Source code
plot.brainGraph_resids Man page Source code
plot.corr_mats Man page Source code
plot.mtpc Man page Source code
plot_brainGraph_gui Man page Source code
plot_brainGraph_multi Man page Source code
plot_global Man page Source code
plot_mni Source code
plot_rich_norm Man page Source code
plot_vertex_measures Man page Source code
plot_volumetric Man page Source code
power264 Man page
print.bg_GLM Man page Source code
print.brainGraphList Man page Source code
print.infl.bg_GLM Source code
print.summary.IC Source code
print.summary.NBS Source code
print.summary.bg_GLM Source code
print.summary.bg_mediate Source code
print.summary.brainGraph Source code
print.summary.brainGraph_boot Source code
print.summary.brainGraph_permute Source code
print.summary.brainGraph_resids Source code
print.summary.mtpc Source code
print_bg_summary Source code
print_contrast_stats_summary Source code
print_contrast_type_summary Source code
print_full_metric Source code
print_model_summary Source code
print_permutation_summary Source code
print_subs_summary Source code
print_text_vector Source code
print_title_summary Source code
pvalArray Source code
qr.array Man page Source code
qr_Q2 Man page Source code
qr_R2 Man page Source code
quit_cb Source code
randomise Man page Source code
randomise_3d Man page Source code
read.array Source code
region.names Man page Source code
region.names.bg_GLM Man page Source code
region.names.brainGraph_resids Man page Source code
region.names.corr_mats Man page Source code
region.names.data.table Man page Source code
region.names.mtpc Man page
rename_levels Man page Source code
residuals.bg_GLM Man page Source code
rich_club_all Man page Source code
rich_club_attrs Man page Source code
rich_club_coeff Man page Source code
rich_club_norm Man page Source code
rich_core Man page Source code
rle_comp Source code
robustness Man page Source code
rotation Source code
rstandard.bg_GLM Man page Source code
rstudent.bg_GLM Man page Source code
rstudent_mat Source code
s_core Man page Source code
save_cb Source code
save_cb1 Source code
save_cb2 Source code
select_graphs Source code
set_brainGraph_attr Man page Source code
set_graph_colors Man page Source code
setup_glm Man page Source code
setup_randomise Source code
sigma.bg_GLM Man page Source code
sigma_loo Source code
sim.rand.graph.clust Man page Source code
sim.rand.graph.hqs Man page Source code
sim.rand.graph.par Man page Source code
simpleCap Source code
slicer Man page Source code
small.world Man page Source code
sortfun Man page Source code
split_string Man page Source code
subset_graph Man page Source code
summary.IC Man page Source code
summary.NBS Man page Source code
summary.bg_GLM Man page Source code
summary.bg_mediate Man page Source code
summary.brainGraph Man page Source code
summary.brainGraph_boot Man page Source code
summary.brainGraph_permute Man page Source code
summary.brainGraph_resids Man page Source code
summary.mtpc Man page Source code
symm_mean Man page Source code
symmetrize Man page Source code
symmetrize.array Man page Source code
symmetrize.matrix Man page Source code
terms.NBS Man page Source code
terms.bg_GLM Man page Source code
terms.mtpc Man page
threshold_consensus Source code
threshold_consistency Source code
threshold_density Source code
threshold_mean_sd Source code
threshold_raw Source code
update_brainGraph_gui Source code
update_fs_names Man page Source code
variable.names.NBS Man page
variable.names.bg_GLM Man page Source code
variable.names.mtpc Man page
vcov.bg_GLM Man page Source code
vec.transform Man page Source code
vertex_attr_dt Man page Source code
vertex_attr_funs Source code
vertex_spatial_dist Man page Source code
vif.bg_GLM Man page Source code
vulnerability Man page Source code
within_module_deg_z_score Man page Source code
write_brainnet Man page Source code
xfm.weights Man page Source code
cwatson/brainGraph documentation built on Feb. 9, 2021, 3:13 a.m.