bc_correct: Error correct BC sequences with known list

In cziegenhain/UMIcountR: tools for spike-in UMI analysis

Error correct BC sequences with known list

Description

bc_correct performs error correction on an input vector of raw sequences and a list of expected sequences.

Usage

bc_correct(inbcs, bc_list, maxdist = 1, cores = 1)

Arguments

inbcs	input character vector of uncorrected BC sequences
bc_list	input character vector of expected known BC sequences
maxdist	edit distance (hamming) used for collapse, Default: 1
cores	Number of CPU cores to use. Default: 1

Details

NA

Value

returns a vector of error-corrected sequences with same length as input sequences.

See Also

data.table-package

Examples

## Not run: 
bc_correct(in_strings, known_strings, maxdist = 1)

## End(Not run)

cziegenhain/UMIcountR documentation built on May 30, 2022, 5:38 p.m.