plot_spike_distances: Plot minimal pairwise distances between spUMIs within / over...

In cziegenhain/UMIcountR: tools for spike-in UMI analysis

Plot minimal pairwise distances between spUMIs within / over cells

Description

Plot minimal pairwise distances between spUMIs within and over cells to determine the appropriate error-correction edit distance for spUMI sequences

Usage

plot_spike_distances(dat, threads = 32)

Arguments

dat	input data.table of loaded spUMI data. Must have BC and spikeUMI columns.
threads	number of threads to use for edit distance calculation, Default: 32

Details

uses hamming distance as the edit distance measure.

Value

returns a ggplot object

See Also

data.table-package

Examples

## Not run: 
plot_spike_distances(spikedat)

## End(Not run)

cziegenhain/UMIcountR documentation built on May 30, 2022, 5:38 p.m.