subsample_recompute: Subsample molecular spikes per cell and recompute hamming...

In cziegenhain/UMIcountR: tools for spike-in UMI analysis

Subsample molecular spikes per cell and recompute hamming distance correction

Description

return_corrected_umi performs error correction on an input vector of raw UMI sequences.

Usage

subsample_recompute(dat, mu_nSpikeUMI, threads = 8)

Arguments

dat	input data.table of loaded spUMI data. Must have BC,UX and spikeUMI_hd2 columns.
mu_nSpikeUMI	mean expression level of the spUMI to subsample to.
threads	number of threads to use, Default: 8

Details

For each cell barcode, subsample the number of spUMIs to an expression level of the given mean and recomputes the error corrected UMIs.

Value

returns ...

See Also

data.table-package

Examples

## Not run: 
subsample_recompute(spikedat, mu_nSpikeUMI)

## End(Not run)

cziegenhain/UMIcountR documentation built on May 30, 2022, 5:38 p.m.