getTopIds: Get the top transcript/ids ranked by differential...

In daewon-gong/NanoPlotR: Nanopore Sequencing Based RNA Modification Detection Visualization

Description

Get the top transcript/ids ranked by differential modification rate. The modResults requires to be a dataframe with format of xPore's output format. The number of top Ids to return can be specified by the numTopIds paramter.

Usage

getTopIds(modResults, numTopIds = 20)

Arguments

modResults	RNA modification detection results in a dataframe.
numTopIds	Number of Top Ids to return.

Value

Vector of number of top Ids ranked by differencial modification rate.

Author(s)

Dae-won Gong, [e-mail]

References

1. Hadley Wickham, Romain François, Lionel Henry and Kirill Müller (2021). dplyr: A Grammar of Data Manipulation. R package version 1.0.7. https://CRAN.R-project.org/package=dplyr

2. Pratanwanich, P. N., Yao, F., Chen, Y., Koh, C. W. Q., Wan, Y. K., Hendra, C., Poon, P., Goh, Y. T., Yap, P. M. L., Chooi, J. Y., Chng, W. J., Ng, S. B., Thiery, A., Goh, W. S. S., & Göke, J. (2021). Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore. Nature Biotechnology,39(11), 1394–1402. https://doi.org/10.1038/s41587-021-00949-w

Examples

getTopIds(RnaModificationResults, numTopIds = 1)

daewon-gong/NanoPlotR documentation built on Dec. 19, 2021, 8:02 p.m.