plotTopKmers: Plot frequency bar plot of top n kmers. The modResults...
In daewon-gong/NanoPlotR: Nanopore Sequencing Based RNA Modification Detection Visualization
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Plot frequency bar plot of top n kmers. The modResults requires a kmer column.
A ggplot bar plot of the frequencies of the top n kmers is returned.
The n kmers can be specified through the numKmers parameter which is defaulted to 10.
Usage
1
plotTopKmers(modResults, numKmers = 10)
Arguments
modResults
RNA modification detection results in a dataframe
numKmers
Integer value specifying how many top kmers to display
Value
a bar plot of the frequencies of the top n kmers
Author(s)
Dae-won Gong, daewon.gong@mail.utoronto.ca
References
Hadley Wickham, Romain François, Lionel Henry and Kirill Müller (2021). dplyr: A Grammar of
Data Manipulation. R package version 1.0.7. https://CRAN.R-project.org/package=dplyr
Pratanwanich, P. N., Yao, F., Chen, Y., Koh, C. W. Q., Wan, Y. K., Hendra, C., Poon, P., Goh,
Y. T., Yap, P. M. L., Chooi, J. Y., Chng, W. J., Ng, S. B., Thiery, A., Goh, W. S. S., & Göke, J. (2021).
Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore.
Nature Biotechnology,39(11), 1394–1402. https://doi.org/10.1038/s41587-021-00949-w
H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016.
Examples
1
plotTopKmers(RnaModificationResults, numKmers = 10)
daewon-gong/NanoPlotR documentation built on Dec. 19, 2021, 8:02 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Plot frequency bar plot of top n kmers. The modResults requires a kmer column. A ggplot bar plot of the frequencies of the top n kmers is returned. The n kmers can be specified through the numKmers parameter which is defaulted to 10.
Usage
1 | plotTopKmers(modResults, numKmers = 10)
|
Arguments
modResults |
RNA modification detection results in a dataframe |
numKmers |
Integer value specifying how many top kmers to display |
Value
a bar plot of the frequencies of the top n kmers
Author(s)
Dae-won Gong, daewon.gong@mail.utoronto.ca
References
Hadley Wickham, Romain François, Lionel Henry and Kirill Müller (2021). dplyr: A Grammar of Data Manipulation. R package version 1.0.7. https://CRAN.R-project.org/package=dplyr
Pratanwanich, P. N., Yao, F., Chen, Y., Koh, C. W. Q., Wan, Y. K., Hendra, C., Poon, P., Goh, Y. T., Yap, P. M. L., Chooi, J. Y., Chng, W. J., Ng, S. B., Thiery, A., Goh, W. S. S., & Göke, J. (2021). Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore. Nature Biotechnology,39(11), 1394–1402. https://doi.org/10.1038/s41587-021-00949-w
H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016.
Examples
1 | plotTopKmers(RnaModificationResults, numKmers = 10)
|
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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