BreakPoint: BreakPoint object

In daewoooo/BreakPointR: Find breakpoints in Strand-seq data

BreakPoint object

Description

The BreakPoint object is output of the function runBreakpointr and is basically a list with various entries. The class() attribute of this list was set to "BreakPoint". Entries can be accessed with the list operators '[[]]' and '$'.

Value

fragments	A GRanges-class object with read fragments.
deltas	A GRanges-class object with deltaWs.
breaks	A GRanges-class object containing the breakpoint coordinates.
counts	A GRanges-class object with the regions between breakpoints.
params	A vector with parameters that were used to obtain the results.

See Also

runBreakpointr

daewoooo/BreakPointR documentation built on April 18, 2023, 8:42 p.m.