plotHeatmap: Genome wide heatmap of template inheritance states
In daewoooo/BreakPointR: Find breakpoints in Strand-seq data

plotHeatmap

R Documentation

Genome wide heatmap of template inheritance states

Description

Plot a genome-wide heatmap of template inheritance states from a BreakPoint object.

Usage

plotHeatmap(files2plot, file = NULL, hotspots = NULL)

Arguments

`files2plot`	A list of files that contains `BreakPoint` objects or a single `BreakPoint` object.
`file`	Name of the file to plot to.
`hotspots`	A `GRanges-class` object with locations of breakpoint hotspots.

Value

A ggplot object.

Author(s)

David Porubsky, Aaron Taudt, Ashley Sanders

Examples

## Get example BreakPoint objects to plot
exampleFolder <- system.file("extdata", "example_results", package="breakpointRdata")
exampleFiles <- list.files(exampleFolder, full.names=TRUE)
breakpoint.objects <- loadFromFiles(exampleFiles)
## Plot the heatmap
plotHeatmap(breakpoint.objects)

daewoooo/BreakPointR documentation built on April 18, 2023, 8:42 p.m.