Man pages for daewoooo/CrossLinkR
R package to search for crosslinks in Hi-C data
| annotateRanges | Function searching for overlaps with various annotation... |
| collapse.str | This function concatenates strings stored in the list |
| crossLinkR | Wrapper function for CrossLinkR package |
| getLinks | Search for links in Hi-C read pairs |
| hotLinks | Search for hotspots of crosslinked reads |
| plotlinkSizeDist | Plot size distribution between links |
| plotPairwiseTransLinks | Plot inter-chromosomal crosslinks per chromosomal paur |
| plotTransLinkCircos | Plot inter-chromosomal crosslinks per chromosome |
| shiftRanges | Shift ranges in certain distance |
| vcf2rangesSS | Read VCF file into a 'GRanges' object |
| vcf2rangesWH | Read VCF file into a 'GRanges' object |
