annotateRanges: Function searching for overlaps with various annotation...

In daewoooo/CrossLinkR: R package to search for crosslinks in Hi-C data

Description

Function searching for overlaps with various annotation ranges.

Usage

annotateRanges(searchGRanges = NULL, maxDist = 1000, blacklist = NULL,
  ...)

Arguments

searchGRanges	Ranges to be searched for overlaps with annotation ranges.
maxDist	Maximal distance of a search range from the annotation range to be considered as hit.
blacklist	List of regions to be excluded from the analysis (format: chromosome start end).
...	Files containing various annotation ranges (format: chromosome start end).

Author(s)

David Porubsky

daewoooo/CrossLinkR documentation built on March 7, 2020, 10:34 p.m.