hotLinks: Search for hotspots of crosslinked reads
In daewoooo/CrossLinkR: R package to search for crosslinks in Hi-C data
Description
Usage
Arguments
Author(s)
View source: R/hotCrosslinks.R
Description
Search for hotspots of crosslinked reads
Usage
1
2
Arguments
crosslinks
File containing analyzed links between read-pairs
maxDist
Maximal distance to connect neighbouring reads into hotspots.
minCov
Minimal coverage to filter hotspot locations.
pval
P value cut-off to filter hotspot locations.
chrom.lengths
Vector containing lenghts of all analyzed chromosomes (Info in Bam header).
Author(s)
David Porubsky
daewoooo/CrossLinkR documentation built on March 7, 2020, 10:34 p.m.
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Description Usage Arguments Author(s)
View source: R/hotCrosslinks.R
Description
Search for hotspots of crosslinked reads
Usage
1 2 |
Arguments
crosslinks |
File containing analyzed links between read-pairs |
maxDist |
Maximal distance to connect neighbouring reads into hotspots. |
minCov |
Minimal coverage to filter hotspot locations. |
pval |
P value cut-off to filter hotspot locations. |
chrom.lengths |
Vector containing lenghts of all analyzed chromosomes (Info in Bam header). |
Author(s)
David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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