vcf2rangesWH: Read VCF file into a 'GRanges' object
In daewoooo/CrossLinkR: R package to search for crosslinks in Hi-C data
Description
Usage
Arguments
Author(s)
Description
Read VCF file into a GRanges object
Usage
1
2
vcf2rangesWH(vcfFile = NULL, genotypeField = 1, filterUnphased = T,
minimalBlock = 10000)
Arguments
vcfFile
VCF file containing phased alleles
genotypeField
In case of multiple samples phased in a single file (Default: 1)
filterUnphased
Filter out unphased alleles (Default: TRUE)
minimalBlock
In case of multiple phased blocks, size of the smallest block (Default: 10000)
Author(s)
David Porubsky
daewoooo/CrossLinkR documentation built on March 7, 2020, 10:34 p.m.
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Description Usage Arguments Author(s)
Description
Read VCF file into a GRanges object
Usage
1 2 | vcf2rangesWH(vcfFile = NULL, genotypeField = 1, filterUnphased = T,
minimalBlock = 10000)
|
Arguments
vcfFile |
VCF file containing phased alleles |
genotypeField |
In case of multiple samples phased in a single file (Default: 1) |
filterUnphased |
Filter out unphased alleles (Default: TRUE) |
minimalBlock |
In case of multiple phased blocks, size of the smallest block (Default: 10000) |
Author(s)
David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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