init_sge: Initialize SGE parameters

In dahcase/mbgstacking: Stacked generalization ensemble model for model-based geostatistics

Description

Creates an object designed to be passed to init_stacker that describes how the internal machinery should handle .

Usage

init_sge(working_folder, r_path, output_files = NULL, error_files = NULL,
  project_name = NULL, other_options = NULL, slots_per_job = c(3, 5),
  package_location = NULL, repeat_iterations = 0, conda_activate = NULL,
  conda_env = NULL, write_shell = F)

Arguments

working_folder	file path. Location accessible to the computing cluster where scratch files can be saved
r_path	file path. Full path to R
output_files	character string. Location where the output (.o) files are saved
error_files	character string. Location where the error (.e) files are save
project_name	character string. Cluster project
other_options	character string. Character string of additional options to pass to qsub
slots_per_job	numeric. Denotes the number of slots to be requested by each submodel. If length>1, first item is passed to child models and second to raster creation
package_location	character string. Denotes the location where mbgstacking is installed (to be passed to the qsubs)
repeat_iterations	numeric: How many times should jobs be relaunched if they don't work the first time.
conda_activate	file path. Denotes the location where a conda environment activate option is. Not implemented.
conda_env	file path. File path to the name of the conda environment. Not implemented.
write_shell	logical. Should the qsub be run via writing shell scripts. If F, qsubs are lanunched via the "-b y" flag

Value

List of lists containing the input parameters to be passed to the stacker

dahcase/mbgstacking documentation built on May 20, 2019, 4:08 p.m.