vcf.annovar.annotation: vcf annotation with ANNOVAR
In daissi/MORFEE: Mutation on Open Reading FramE annotation
Description
vcf annotation with ANNOVAR
Usage
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vcf.annovar.annotation(
my_raw_vcf,
path_results = "MORFEE_results",
path_to_annovar = NA,
path_annovar_db = "DB_annovar"
)
Arguments
my_raw_vcf
a string to define name of raw VCF to annotate
path_results
a path where the annoated VCF will be saved
path_to_annovar
define path to ANNOVAR binaries
path_annovar_db
a path where the database will be stored
daissi/MORFEE documentation built on Jan. 9, 2021, 10:52 a.m.
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Description
vcf annotation with ANNOVAR
Usage
1 2 3 4 5 6 | vcf.annovar.annotation(
my_raw_vcf,
path_results = "MORFEE_results",
path_to_annovar = NA,
path_annovar_db = "DB_annovar"
)
|
Arguments
my_raw_vcf |
a string to define name of raw VCF to annotate |
path_results |
a path where the annoated VCF will be saved |
path_to_annovar |
define path to ANNOVAR binaries |
path_annovar_db |
a path where the database will be stored |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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