score_mate: Score Mate

In danagibbon/MultifacitedChoice:

Description

Score the mating of a single female and male.
Apply this function to multiple matings using the rank_mates function.

Usage

score_mate(DB, female, male, type, bonus = NULL, weighted_alleles = NULL)

Arguments

DB	RSQLite database generated by make_database
female	Sample ID of the female to compare to a male. The Sample ID must match the ones found in the DB.
male	Sample ID of the male to compare to a female. The Sample ID must match the ones found in the DB.
type	The type of mating that is advantageous. all_alleles: the user specifies for each locus what is advantageous. assortive: Assortive (same alleles) is advantageous for all loci disassortive: Disassortive (different alleles) is advantageous for all loci
bonus	Numeric value to increase mating score if the state of alleles specified in weighted_alleles are met. If you specify .15 as your bonus, and 2/3 of your loci match the advantageous, then .10 will be used as the bonus. The final score will be increased by 10%. Must specify weighted_alleles.
weighted_alleles	vector listing allele IDs to calculate the bonus. Must specify bonus.

Value

dataframe

Examples

## Not run: 
single <- score_mate(DB = DB, female = female,
                     male = male, type = type,
                     bonus=bonus, weighted_alleles=weighted_alleles)

## End(Not run)

danagibbon/MultifacitedChoice documentation built on Dec. 31, 2020, 11:10 p.m.