plotPotential: graphical visualization of a mating potential object

In danhan52/mateable: Tools to Assess Mating Potential in Space and Time

Description

Visualize mating potential

Usage

plotPotential(matPot, subject = NULL, plotType = "auto", density = T,
  sub.ids = NULL, N = 9, sample = "random", main = NULL, ...)

Arguments

matPot	a mating potential object
subject	character, either 'ind' or 'pair', indicating whether the subject being visualized is individuals or pairwise interactions
plotType	character, indicating what plots are to be displayed. See details. Options are histogram ('hist'), network diagram ('net'), and heatmap ('heat'). If mating potential object
density	logical. If TRUE (default), plots probability density over histogram.
sub.ids	a vector containing the ids of individuals to be represented in pairwise potential plots
N	a positive number indicating the number of individuals to sample if sub.ids = 'random'
sample	a character string specifying how to choose a subset of individuals to be represented in pairwise potential plots. Possible values are "random" (default) or "all" (see details).
main	the main title (on top of plot)
...	optional arguments for the plot function

Details

Options for plotType are 'hist' (histogram), 'net' (network diagram), 'heat' (heatmap), and 'auto'. Default value is 'auto': if the mating potential object contains pairwise potential, 'auto' returns all plot types, otherwise it returns histograms of individual potential.

Author(s)

Amy Waananen

See Also

see generic function points for values of pch

Examples

pop <- simulateScene()
sync <- synchrony(pop, "augs")
plotPotential(sync)

danhan52/mateable documentation built on May 14, 2019, 3:35 p.m.