plot3DPotential: graphical visualization of multiple mating potential objects
In danhan52/mateable: Tools to Assess Mating Potential in Space and Time

Description Usage Arguments Details Author(s) See Also Examples

Visualize multiple dimensions of mating potential

1 2	plot3DPotential(matPots, subject = NULL, density = TRUE, sub.ids = NULL, N = 3, sample = NA, main = NULL, text.cex = 0.7, pt.cex = 0.7)

`matPots`	list, contains one or multiple mating potential objects representing unique potential dimensions
`subject`	character, indicates whether the subject to be visualized is individuals (`subject` = 'ind') or all pairwise interactions (`subject` = 'pair')
`density`	logical, if TRUE (default), plots probability density over histogram
`sub.ids`	vector, contains the IDs of individuals to be represented in pairwise potential plots
`N`	integer, indicates the number of individuals to sample if sub.ids = 'random' (default N = 3)
`sample`	character, specifies how to sample individuals to be represented in pairwise potential plots. Possible values are "random" (default) or "all". See details.
`main`	character, the main plot title, if NULL, defaults to 'individual potential' or 'pairwise potential,' corresponding to `subject`
`text.cex`	specify text expansion factor (text size relative to device default)
`pt.cex`	specify point expansion factor (point size relative to device default)

The individuals to be represented in the pairwise potential plots can either be specified explicitly through sub.ids, chosen randomly (sample = 'random'), or all individuals can be selected (sample = 'all'). The default is to randonly select 9 individuals. If multiple years are being plotted, the subset is sampled from all years and the same individuals will be represented in each year, if possible.

Amy Waananen

see generic function points for values of pch

pop <- simulateScene()
sync <- synchrony(pop, "augs")
prox <- proximity(pop, 'maxProp')
compat <- compatibility(pop, 'si_echinacea')
plot3DPotential(list(sync,prox,compat), subject = 'ind')