dot-prune_tree: Prune Phylogenetic Tree For Leave-One-Out Analysis
In daniel1noble/orchaRd: Orchard Plots and Prediction Intervals for Meta-analysis and Meta-regression
.prune_tree R Documentation
Prune Phylogenetic Tree For Leave-One-Out Analysis
Description
Removes species from a phylogenetic tree that are not present in the current data subset
during leave-one-out analysis.
Usage
.prune_tree(tree, species_names)
Arguments
tree
A phylogenetic tree object of class "phylo".
species_names
A vector of species names that should remain in the pruned tree.
These are the species present in the current data subset.
Value
A pruned phylogenetic tree containing only the tips for species in species_names.
Author(s)
Daniel Noble - daniel.noble@anu.edu.au
Facundo Decunta - fdecunta@agro.uba.ar
daniel1noble/orchaRd documentation built on April 17, 2025, 3:59 a.m.
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| .prune_tree | R Documentation |
Prune Phylogenetic Tree For Leave-One-Out Analysis
Description
Removes species from a phylogenetic tree that are not present in the current data subset during leave-one-out analysis.
Usage
.prune_tree(tree, species_names)
Arguments
tree |
A phylogenetic tree object of class "phylo". |
species_names |
A vector of species names that should remain in the pruned tree. These are the species present in the current data subset. |
Value
A pruned phylogenetic tree containing only the tips for species in species_names.
Author(s)
Daniel Noble - daniel.noble@anu.edu.au
Facundo Decunta - fdecunta@agro.uba.ar
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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