dot-validate_phylo_args: Validate Phylogenetic Arguments

In daniel1noble/orchaRd: Orchard Plots and Prediction Intervals for Meta-analysis and Meta-regression

Validate Phylogenetic Arguments

Description

Checks the validity of the arguments provided for phylogenetic matrix calculations. Ensures the tree is a proper phylogenetic object and that the species column name is correctly linked to a random effect in the model.

Usage

.validate_phylo_args(model, phylo_args)

Arguments

model	A metafor model object with random effects.
phylo_args	A list containing the arguments for the phylogenetic matrix calculation: tree: A phylogenetic tree object of class "phylo" species_colname: Name of the column in the data corresponding to species names, which should be a random factor linked to a matrix in the model

Value

The validated phylo_args list if all checks pass.

daniel1noble/orchaRd documentation built on April 17, 2025, 3:59 a.m.