TCGAanalyze_analyseGRN: Generate network

Description Usage Arguments Value

View source: R/analyze.R

Description

TCGAanalyze_analyseGRN perform gene regulatory network.

Usage

1
TCGAanalyze_analyseGRN(TFs, normCounts, kNum)

Arguments

TFs

a vector of genes.

normCounts

is a matrix of gene expression with genes in rows and samples in columns.

kNum

the number of nearest neighbors to consider to estimate the mutual information. Must be less than the number of columns of normCounts.

Value

an adjacent matrix


daniel615212950/TCGAbiolinks documentation built on Dec. 19, 2021, 8:06 p.m.