Man pages for daniellyz/MergeION2
Merging and Networking Scans from Multiple LC-MS/MS Raw Data Files
| average_spectrum | MS1 or MS2 spectra alignment |
| cut_mz_list | segment mz list |
| dataForPlotly | Function to generate data for interactive visulization |
| denoise_ms1_spectrum | Keep top peaks |
| denoise_ms2_spectrum | Keep top peaks |
| denoise_spectrum | Keep top peaks and noramalzie |
| library2 | A test data contains spectra and metadata @docType data |
| library_combiner | Combine multiple libraries |
| library_generator | Digitizing and networking LC-MS/MS data |
| library_messar | Substructure recommendation for unknown spectrum |
| library_query | Spectral library query |
| library_reader | Read and extract an existing library |
| library_reporter | Generating a summary of the spectral library |
| library_visualizer | Visualize selected mass spectra in the spectral library |
| library_visualizer_interactive | Interactive spectral plot |
| library_writer | Writing the spectral library to an open format |
| ppm_distance | ppm error calculation: |
| process_compMS2Miner | Read and combine targeted MS1 and MS2 scans from one LC-MS/MS... |
| process_consensus | Extracting or generating representative or consensus scans... |
| process_dda | Create pseudo-library file from a LC-MS/MS data file through... |
| process_lib2network | Create feature-based molecular networks from a consensus... |
| process_metadata | Create additional metadata for library generation |
| process_mzmine | Create metadata from mzmine feature quantification table |
| process_query | Searching and managing the spectral library |
| process_RMassBank | Read and combine targeted MS1 and MS2 scans from one LC-MS/MS... |
| process_similarity | Searching a query spectrum in a spectral library The function... |
| process_SmartMS1 | Read and combine targeted MS1 scans from one LC-MS/MS file... |
| process_SmartMS2 | Read and combine targeted MS2 scans from one LC-MS/MS file... |
| runGUI | Library search GUI |
| separated_peaks2 | Find indexes from "ranges": separated isomer peaks according... |
| updateSpecOneID | Genereate consensus library for a given compound ID |
