average_spectrum | MS1 or MS2 spectra alignment |
dataForPlotly | Function to generate data for interactive visulization |
denoise_spectrum | Keep top peaks and noramalzie |
library2 | A test data contains spectra and metadata @docType data |
library_combiner | Combine multiple libraries |
library_generator | Digitizing and networking LC-MS/MS data |
library_messar | Substructure recommendation for unknown spectrum |
library_query | Spectral library query |
library_reader | Read and extract an existing library |
library_reporter | Generating a summary of the spectral library |
library_visualizer | Visualize selected mass spectra in the spectral library |
library_visualizer_interactive | Interactive spectral plot |
library_writer | Writing the spectral library to an open format |
process_compMS2Miner | Read and combine targeted MS1 and MS2 scans from one LC-MS/MS... |
process_consensus | Extracting or generating representative or consensus scans... |
process_dda | Create pseudo-library file from a LC-MS/MS data file through... |
process_lib2network | Create feature-based molecular networks from a consensus... |
process_metadata | Create additional metadata for library generation |
process_mzmine | Create metadata from mzmine feature quantification table |
process_query | Searching and managing the spectral library |
process_RMassBank | Read and combine targeted MS1 and MS2 scans from one LC-MS/MS... |
process_similarity | Searching a query spectrum in a spectral library |
process_SmartMS1 | Read and combine targeted MS1 scans from one LC-MS/MS file... |
process_SmartMS2 | Read and combine targeted MS2 scans from one LC-MS/MS file... |
runGUI | Library search GUI |
updateSpecOneID | Genereate consensus library for a given compound ID |
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