View source: R/update_visualizer.R
dataForPlotly | R Documentation |
Function to generate data for interactive visulization
dataForPlotly(
input_library,
id = NULL,
type = c("complete", "consensus"),
query_spectrum = NULL,
t = 0.25,
b = 10
)
input_library |
A list generated by the function library_generator() or the name of mgf/msp/RData spectral library file |
id |
Compound id of the spectra to be plotted (both most recent MS1 and MS2 spectra will be plotted!) |
type |
Character. "Complete" if raw specra are visualized. "Consensus" if consensus spectra are visualized |
query_spectrum |
Two-column data matrix. Optional for mirror plot. Two columns represent m/z and intensity of query tandem spectrum. |
t |
numeric value specifying the tolerance used to align the m/z values of the two spectra (used in calculating consine similarity score), 0.25 by default. |
b |
numeric value specifying the baseline threshold for peak identification. Expressed as a percent of the maximum intensity (used in calculating consine similarity score), 10 by default. |
a dataframe with m/z, intensity, ID and all the metadata columns from input_library
metadata
Yingjie Zhang
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