process_similarity: Searching a query spectrum in a spectral library
In daniellyz/MergeION2: Merging and Networking Scans from Multiple LC-MS/MS Raw Data Files
View source: R/process_similarity.R
process_similarity R Documentation
Searching a query spectrum in a spectral library
Description
Searching a query spectrum in a spectral library
Usage
process_similarity(
query_spectrum,
polarity = "Positive",
prec_mz = 100,
use.loss = TRUE,
use.prec = FALSE,
input_library = NULL,
method = c("Precision", "Recall", "F1", "Cosine", "Spearman", "MassBank", "NIST", "HM",
"Entropy"),
prec_ppm_search = 10,
frag_mz_search = 0.005,
min_frag_match = 6
)
Arguments
query_spectrum
two columns spectrum list
use.loss
boolean if natrual loss also be used, prec_mz can not be missing if set true.
Author(s)
Youzhong Liu, Youzhong.Liu@uantwerpen.be
daniellyz/MergeION2 documentation built on Jan. 26, 2024, 6:24 a.m.
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View source: R/process_similarity.R
| process_similarity | R Documentation |
Searching a query spectrum in a spectral library
Description
Searching a query spectrum in a spectral library
Usage
process_similarity(
query_spectrum,
polarity = "Positive",
prec_mz = 100,
use.loss = TRUE,
use.prec = FALSE,
input_library = NULL,
method = c("Precision", "Recall", "F1", "Cosine", "Spearman", "MassBank", "NIST", "HM",
"Entropy"),
prec_ppm_search = 10,
frag_mz_search = 0.005,
min_frag_match = 6
)
Arguments
query_spectrum |
two columns spectrum list |
use.loss |
boolean if natrual loss also be used, |
Author(s)
Youzhong Liu, Youzhong.Liu@uantwerpen.be
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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