bedashap: Convert Rbed object to binary haplotype format
In danjlawson/pcapred: Produce PC Eigenvector Predictions From Plink Input Data And Loadings
Description
Usage
Arguments
Value
Description
Convert an rbed object from plink's native file format into a haplotype-based binary matrix. This involves pseudo-phasing, where alleles are assigned at random to either of the two haplotypes.
Usage
1
bedashap(dat, ploidy = 2)
Arguments
dat
an rbed object as output by readbed
ploidy
the ploidy of the data. The only plausible value for plink format is 2.
Value
a "hapmatrix" object, which is a list containing:
data: The SNP matrix in haplotype format with pN rows and L columns (p=ploidy)
snpinfo: as provided from the rbed object
indinfo: as provided from the rbed object
hapinfo: an N by p matrix giving individual identifiers for the haplotypes
danjlawson/pcapred documentation built on Oct. 7, 2021, 3:47 p.m.
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Description Usage Arguments Value
Description
Convert an rbed object from plink's native file format into a haplotype-based binary matrix. This involves pseudo-phasing, where alleles are assigned at random to either of the two haplotypes.
Usage
1 | bedashap(dat, ploidy = 2)
|
Arguments
dat |
an rbed object as output by |
ploidy |
the ploidy of the data. The only plausible value for plink format is 2. |
Value
a "hapmatrix" object, which is a list containing:
data: The SNP matrix in haplotype format with pN rows and L columns (p=ploidy)
snpinfo: as provided from the rbed object
indinfo: as provided from the rbed object
hapinfo: an N by p matrix giving individual identifiers for the haplotypes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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