bedasmatrix: Get Bed Data As A Matrix
In danjlawson/pcapred: Produce PC Eigenvector Predictions From Plink Input Data And Loadings
Description
Usage
Arguments
Value
See Also
Description
Gets a bed file as a regular R matrix.
Usage
1
bedasmatrix(bed, meanimpute = FALSE, normalise = TRUE, verbose = TRUE)
Arguments
bed
The "rbed" object to read
meanimpute
(default FALSE) Whether to replace missing values with their mean (if normalise=TRUE only)
normalise
(default TRUE) Whether to normalise data by SNP frequency, or return counts.
verbose
(default TRUE) whether to show progress for individual access
Value
A matrix of data with the additional attribute "idx" referring to the indexes of the returned individuals.
See Also
danjlawson/pcapred documentation built on Oct. 7, 2021, 3:47 p.m.
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Description Usage Arguments Value See Also
Description
Gets a bed file as a regular R matrix.
Usage
1 | bedasmatrix(bed, meanimpute = FALSE, normalise = TRUE, verbose = TRUE)
|
Arguments
bed |
The "rbed" object to read |
meanimpute |
(default FALSE) Whether to replace missing values with their mean (if normalise=TRUE only) |
normalise |
(default TRUE) Whether to normalise data by SNP frequency, or return counts. |
verbose |
(default TRUE) whether to show progress for individual access |
Value
A matrix of data with the additional attribute "idx" referring to the indexes of the returned individuals.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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