getinds: Extract a chunk of individuals from a binary format bed...
In danjlawson/pcapred: Produce PC Eigenvector Predictions From Plink Input Data And Loadings
Description
Usage
Arguments
Value
See Also
Description
The binary bed format stores 4 individuals in a byte. This returns the SNP details for these 4 individuals, applying any SNP filtering for a merged dataset as well as flipping any alleles.
Usage
1
getinds(bed, x)
Arguments
bed
An "rbed" object as returned from readbed or mergeref
x
The index of the chunk to extract (NOT an individual index)
Value
a matrix of dimension 4 by (bed$no.snp or length(bed$datkeep)) containing the SNP values for each individual
See Also
danjlawson/pcapred documentation built on Oct. 7, 2021, 3:47 p.m.
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Description Usage Arguments Value See Also
Description
The binary bed format stores 4 individuals in a byte. This returns the SNP details for these 4 individuals, applying any SNP filtering for a merged dataset as well as flipping any alleles.
Usage
1 | getinds(bed, x)
|
Arguments
bed |
An "rbed" object as returned from |
x |
The index of the chunk to extract (NOT an individual index) |
Value
a matrix of dimension 4 by (bed$no.snp or length(bed$datkeep)) containing the SNP values for each individual
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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