Man pages for danjlawson/robustarchitecture
Estimate Genomic Architecture parameters using robust statistics
| annotatearchitecture | Annotate SNPs in a genetic architecture according to a model |
| architectureplot | Plot data annotated |
| bootstrap | Obtain a bootstrap sample of Genomic Architecture s |
| defaultbins | Default bin locations for general purpose usage |
| defaultthresholds | Default thresholds |
| detail | Details of an architecture |
| fullsearch | Search s for the best parameter |
| getbeta | Effect size of a SNP |
| getsigma | Get the best estimate of sigma conditional on s |
| linesearch | Perform a line search of the Genomic Architecture parameter s |
| lossfunction | Compute the loss from summary statistics |
| lossfunctionp | Loss function evaluation from architecture and data |
| lossfunctionss | Calculation of histogram-based summary statistics of a... |
| make_test_data | Simulate from a Genomic Architecture |
| random_data | Choose k random SNPs |
| robustarchitecture-package | robustarchitecture : Robustly Learn Genomic Architecture from... |
| thresh_data | Threshold a dataset based on frequency |
| topdata | Simulated summary data with Genomic Architecture |
| top_data | Retain only top SNPs by variance explained |
