correlate_fastspar: Coabundance analysis using SparCC as implemented in fastspar
In danlooo/coabundance: What the Package Does (One Line, Title Case)
Description
This implementation is way faster than correlate_spiec_easi_sparcc but requires linux and the external shell command fastspar.
Usage
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correlate_fastspar(
data,
iterations = 50,
exclude_iterations = 10,
bootstraps = 200,
threads = 1
)
Arguments
data
integer matrix of abundance count data. One sample per row and one taxon per column
danlooo/coabundance documentation built on Jan. 24, 2021, 9:16 a.m.
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Description
This implementation is way faster than correlate_spiec_easi_sparcc but requires linux and the external shell command fastspar.
Usage
1 2 3 4 5 6 7 | correlate_fastspar(
data,
iterations = 50,
exclude_iterations = 10,
bootstraps = 200,
threads = 1
)
|
Arguments
data |
integer matrix of abundance count data. One sample per row and one taxon per column |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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