correlate_mb: Coabundance analysis using mb as implemented in SpiecEasi

In danlooo/coabundance: What the Package Does (One Line, Title Case)

Description

This is a wrapper arround function SpiecEasi::spiec.easi with argument method = "mb".

Usage

correlate_mb(
  data,
  pulsar.params = list(thresh = 0.05, subsample.ratio = 0.8, ncores =
    getOption("mc.cores"), rep.num = 20, seed = 1337),
  ...
)

Arguments

data	integer matrix of abundance count data. One sample per row and one taxon per column
pulsar.params	list of options passed to pulsar.params
...	further options passed to spiec.easi

References

\insertRef

spiec_easicoabundance

\insertRef

mbcoabundance

danlooo/coabundance documentation built on Jan. 24, 2021, 9:16 a.m.