Filter a coabundance object
1 2 3 4 5 6 7 | filter.coabundance(
x,
max_pval = 0.05,
min_abs_estimate = NULL,
remove_isolated_nodes = TRUE,
recalculate_topology = TRUE
)
|
x |
coabundance object |
max_pval |
maximum p value to keep an edge. Will be ignores if the p.value is not available |
min_abs_estimate |
minimal absolute value of the estimate to keep an edge. This is to filter edges with a low effect size. |
remove_isolated_nodes |
TRUE if nodes not being part of any edge after filtering should be removed, FALSE otherwise. |
recalculate_topology |
TRUE if node topology metrics e.g. centrality scores should be recalculated after filtering, FALSE otherwise. |
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