add.env | Takes an enmtools.species object and a set of environment... |
assert.extras | Assert that the extra packages needed for an ENMTools... |
background.buffer | Takes a set of points, a buffer radius, a buffer type, and a... |
background.points.buffer | Takes a set of points, a buffer radius, a sample size, and a... |
background.raster.buffer | Takes a set of points, a buffer radius, and a mask and... |
background.shape.buffer | Takes a set of points and a buffer radius, and returns a... |
background.test | background.test Conduct a background test (also called a... |
calc.B1 | calc.B1, Calculates standardized version of Levins (1968) B1... |
calc.B2 | calc.B2, Calculates standardized version of Levins (1968) B2... |
check.bg | Takes an emtools.species object and adds background points if... |
check.clade | Checking for complians of an enmtools.clade object |
check.env | Automating some basic tasks for using a raster stack for... |
check.extras | Check that the extra packages needed for an ENMTools function... |
check.species | Checking compliance for an object of class enmtools.species. |
clamp.env | Takes an emtools.model object and a set of environment layers... |
combine.species | Takes a list of enmtools.species objects and combines them... |
drop.species | Takes a an ENMTools clade object and a vector of species... |
enmtools.aoc | Takes an overlap matrix and a tree and runs permutation tests... |
enmtools.bc | Takes an emtools.species object with presence and background... |
enmtools.calibrate | Takes an emtools.model object, and reformats it to run... |
enmtools.clade | Defining a class for enmtools.clade. Each clade gets: |
enmtools.dm | Takes an emtools.species object with presence and background... |
enmtools.ecospat.bg | enmtools.ecospat.bg, Runs an ecospat background/similarity... |
enmtools.ecospat.id | enmtools.ecospat.id, Runs an ecospat identity test using... |
enmtools.gam | Takes an emtools.species object with presence and background... |
enmtools.glm | Takes an enmtools.species object with presence and background... |
enmtools.hypervolume | THIS FUNCTION IS CURRENTLY DISABLED. Takes an... |
enmtools.maxent | Takes an emtools.species object with presence and background... |
enmtools.rf | Takes an emtools.species object with presence and background... |
enmtools.rf.ranger | Takes an emtools.species object with presence and background... |
enmtools.species | Defining a class for enmtools.species. |
enmtools.vip | Takes an enmtools.model object, and performs variable... |
env.breadth | Calculates breadth of a model in environment space using... |
env.evaluate | Calculates evaluation metrics (AUC, etc.) using latin... |
env.overlap | Calculates overlap between models in environment space using... |
euro.worldclim | Worldclim data for Europe |
find.extras | Find the extra packages needed for an ENMTools function |
find.extras.missing | Find the extra packages needed for an ENMTools function that... |
geog.range.overlap | Takes two emtools.species objects with range rasters,... |
hypervolume.overlap | Takes an emtools.species object and environmental layers, and... |
iberolacerta.clade | GBIF data for a clade of Iberolacerta lizards from spain |
identity.test | identity.test Conduct a niche identity/equivalency test as... |
install.extras | install.extras |
interactive.plot | Generic function for making interactive plots of ENMTools... |
interactive.plot.enmtools.model | Plot an enmtools.model object on an interactive map |
interactive.plot.enmtools.species | Plot an enmtools.species object on an interactive map |
marginal.plots | marginal.plots Plots the marginal response of a model to an... |
moses.list | Takes a list of enmtools.species objects and uses model... |
multistack.pca | multistack.pca, simultaneous PCA on more than one stack of... |
node.overlap | Takes an overlap matrix and a tree and returns average... |
point.overlap | Takes two emtools.species objects with range rasters,... |
rangebreak.blob | rangebreak.blob Conduct a blob rangebreak test as described... |
rangebreak.linear | rangebreak.linear Conduct a linear rangebreak test as... |
rangebreak.ribbon | rangebreak.ribbon Conduct a ribbon rangebreak test as... |
raster.breadth | raster.breadth, applies measures of niche breadth to an ENM |
raster.cor | Calculates the correlation coefficient between two rasters. |
raster.cor.matrix | Takes a raster stack and returns a data frame containing... |
raster.cor.plot | Takes a raster stack and returns a data frame containing... |
raster.overlap | raster.overlap, measures overlap between two ENMs |
raster.pca | raster.pca, PCA on a set of environmental rasters |
raster.resid | raster.resid Measure standardized residuals from a linear... |
raster.standardize | raster.standardize, standardizes all values in a raster file |
rasterToPoints2 | get terra to produce same output as raster::rasterToPoints |
sim.points | Simulate a point process from an enmtools.model object |
species.from.file | Takes a csv file and uses it to construct one or more... |
threespace.plot | threespace.plot, A plot that compares the environmental... |
trimdupes.by.raster | Takes a set of points and a raster mask and returns a data... |
unwrap_list | export |
visualize.enm | visualize.enm, Makes a heatmap of suitability of habitat in... |
visualize.overlap | visualize.overlap, Makes a contour map of suitability of... |
wrap_list | export |
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