visualize.enm: visualize.enm, Makes a heatmap of suitability of habitat in...

In danlwarren/ENMTools: Analysis of Niche Evolution using Niche and Distribution Models

visualize.enm, Makes a heatmap of suitability of habitat in environment space according to a given model

Description

visualize.enm, Makes a heatmap of suitability of habitat in environment space according to a given model

Usage

visualize.enm(
  model,
  env,
  nbins = 100,
  layers = colnames(model$analysis.df)[1:2],
  plot.test.data = FALSE,
  plot.points = TRUE,
  minmax = "env"
)

Arguments

model	An enmtools.model object
env	A set of environmental layers
nbins	The number of bins per layer to use for drawing environment space
layers	A vector of layer names to use for drawing environment space
plot.test.data	Logical determining whether test data should be plotted, if present. If test data is plotted, it will appear as translucent green triangles.
plot.points	Logical determining whether presence points should be plotted on suitability plot
minmax	Either "env", to set the minima and maxima using the environment layers, "points" to set the minima and maxima using the presence and background data, or a named list of minima and maxima for each layer.

Value

suit.plot A list containing two dimensional plot of an ENM in environment space and a plot of the available environments.

Examples

aurelioi.glm <- enmtools.glm(iberolacerta.clade$species$aurelioi, euro.worldclim,
f = pres ~ poly(bio1, 4) + poly(bio12, 4))
visualize.enm(aurelioi.glm, euro.worldclim, layers = c("bio1", "bio12"))

danlwarren/ENMTools documentation built on Jan. 17, 2025, 8:42 a.m.