Description Usage Arguments Value Examples
Uses ape functionality to get the frequencies and names of clades in an MCMC chain or subset thereof.
1 | clade.freq(x, start, end, rooted = FALSE, ...)
|
x |
A multiPhylo or rwty.chain object |
start |
The index of the first tree to consider in calcuating frequencies |
end |
The index of the last tree to consider in calculating frequencies |
rooted |
(TRUE/FALSE). Tells RWTY whether your trees are rooted or not. |
... |
Arguments to be passed to ape's prop.part function |
clade.df A data froma containing clade names and frequencies
1 2 3 4 5 |
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