Files in danlwarren/RWTY
R We There Yet? Visualizing MCMC Convergence in Phylogenetics
.Rbuildignore
.github/workflows/r-cmd-check.yml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/.Rapp.history
R/analyze.rwty.R
R/check.chains.R
R/clade.freq.R
R/combine.ptables.R
R/cumulative.freq.R
R/estimate.autocorr.m.R
R/fungus.R
R/load.multi.R
R/load.trees.R
R/makeplot.acsf.cumulative.R
R/makeplot.acsf.sliding.R
R/makeplot.all.params.R
R/makeplot.asdsf.R
R/makeplot.autocorr.R
R/makeplot.pairs.R
R/makeplot.param.R
R/makeplot.pseudo.ess.R
R/makeplot.splitfreq.matrix.R
R/makeplot.splitfreqs.cumulative.R
R/makeplot.splitfreqs.sliding.R
R/makeplot.topology.R
R/makeplot.treespace.R
R/parse.clades.R
R/parse.slide.clades.R
R/print.rwty.chain.R
R/salamanders.R
R/slide.freq.R
R/topological.approx.ess.R
R/topological.autocorr.R
R/topological.pseudo.ess.R
R/tree.dist.matrix.R
R/treespace.R
README.Rmd
README.html
README.md
RWTY.Rproj
data/datalist
data/fungus.RData
data/salamanders.RData
inst/CITATION
inst/report.template.Rmd
man/.Rapp.history
man/analyze.rwty.Rd
man/check.chains.Rd
man/clade.freq.Rd
man/combine.ptables.Rd
man/cumulative.freq.Rd
man/estimate.autocorr.m.Rd
man/fungus.Rd
man/load.multi.Rd
man/load.trees.Rd
man/makeplot.acsf.cumulative.Rd
man/makeplot.acsf.sliding.Rd
man/makeplot.all.params.Rd
man/makeplot.asdsf.Rd
man/makeplot.autocorr.Rd
man/makeplot.pairs.Rd
man/makeplot.param.Rd
man/makeplot.pseudo.ess.Rd
man/makeplot.splitfreq.matrix.Rd
man/makeplot.splitfreqs.cumulative.Rd
man/makeplot.splitfreqs.sliding.Rd
man/makeplot.topology.Rd
man/makeplot.treespace.Rd
man/parse.clades.Rd
man/print.rwty.chain.Rd
man/salamanders.Rd
man/slide.freq.Rd
man/topological.approx.ess.Rd
man/topological.autocorr.Rd
man/topological.pseudo.ess.Rd
man/tree.dist.matrix.Rd
man/treespace.Rd
tests/testthat.R
tests/testthat/test_rwty.R
vignettes/acsf.cumulative.png
vignettes/acsf.sliding.png
vignettes/asdsf.plot.png
vignettes/asdsf.tree.png
vignettes/autocorr.plot.png
vignettes/compare.plot.png
vignettes/cumulative.asdsf.png
vignettes/cumulative.posterior.png
vignettes/cumulative.single.png
vignettes/ess.plot.png
vignettes/heatmap.png
vignettes/heatmap2.png
vignettes/lnl.plot.png
vignettes/param.correlations.default.png
vignettes/param.correlations.supplied.png
vignettes/param.density.plot.png
vignettes/param.plot.png
vignettes/param.trace.plot.png
vignettes/plot-comparisons.R
vignettes/plot-comparisons.Rmd
vignettes/plot-comparisons.html
vignettes/pointsplot.png
vignettes/pointsplot2.png
vignettes/rwty.R
vignettes/rwty.Rmd
vignettes/rwty.html
vignettes/sliding.posterior.png
vignettes/sliding.single.png
vignettes/splitfreq.matrix.png
vignettes/splitfreqs.cumulative.png
vignettes/splitfreqs.sliding.png
vignettes/topology.density.plot.png
vignettes/topology.plot.png
vignettes/topology.trace.plot.png
