Files in danlwarren/RWTY
R We There Yet? Visualizing MCMC Convergence in Phylogenetics

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/.Rapp.history
R/analyze.rwty.R R/check.chains.R R/clade.freq.R R/combine.ptables.R R/cumulative.freq.R R/estimate.autocorr.m.R R/fungus.R R/load.multi.R R/load.trees.R R/makeplot.acsf.cumulative.R R/makeplot.acsf.sliding.R R/makeplot.all.params.R R/makeplot.asdsf.R R/makeplot.autocorr.R R/makeplot.pairs.R R/makeplot.param.R R/makeplot.pseudo.ess.R R/makeplot.splitfreq.matrix.R R/makeplot.splitfreqs.cumulative.R R/makeplot.splitfreqs.sliding.R R/makeplot.topology.R R/makeplot.treespace.R R/parse.clades.R R/print.rwty.chain.R R/salamanders.R R/slide.freq.R R/topological.approx.ess.R R/topological.autocorr.R R/topological.pseudo.ess.R R/tree.dist.matrix.R R/treespace.R README.Rmd
README.html
RWTY.Rproj
data/datalist
data/fungus.RData
data/salamanders.RData
inst/CITATION
inst/doc/plot-comparisons.R inst/doc/plot-comparisons.Rmd
inst/doc/plot-comparisons.html
inst/doc/rwty.R inst/doc/rwty.Rmd
inst/doc/rwty.html
man/.Rapp.history
man/analyze.rwty.Rd man/check.chains.Rd man/clade.freq.Rd man/combine.ptables.Rd man/cumulative.freq.Rd man/estimate.autocorr.m.Rd man/fungus.Rd man/load.multi.Rd man/load.trees.Rd man/makeplot.acsf.cumulative.Rd man/makeplot.acsf.sliding.Rd man/makeplot.all.params.Rd man/makeplot.asdsf.Rd man/makeplot.autocorr.Rd man/makeplot.pairs.Rd man/makeplot.param.Rd man/makeplot.pseudo.ess.Rd man/makeplot.splitfreq.matrix.Rd man/makeplot.splitfreqs.cumulative.Rd man/makeplot.splitfreqs.sliding.Rd man/makeplot.topology.Rd man/makeplot.treespace.Rd man/parse.clades.Rd man/print.rwty.chain.Rd man/salamanders.Rd man/slide.freq.Rd man/topological.approx.ess.Rd man/topological.autocorr.Rd man/topological.pseudo.ess.Rd man/tree.dist.matrix.Rd man/treespace.Rd tests/testthat.R tests/testthat/load-test.R
tests/testthat/old-test.txt
tests/testthat/test-long.R tests/testthat/test-short.R
tests/testthat/testchain.p
tests/testthat/testchain.t
tests/testthat/testchain2.p
tests/testthat/testchain2.t
vignettes/acsf.cumulative.png
vignettes/acsf.sliding.png
vignettes/asdsf.plot.png
vignettes/asdsf.tree.png
vignettes/autocorr.plot.png
vignettes/compare.plot.png
vignettes/cumulative.asdsf.png
vignettes/cumulative.posterior.png
vignettes/cumulative.single.png
vignettes/ess.plot.png
vignettes/heatmap.png
vignettes/heatmap2.png
vignettes/lnl.plot.png
vignettes/param.correlations.default.png
vignettes/param.correlations.supplied.png
vignettes/param.density.plot.png
vignettes/param.plot.png
vignettes/param.trace.plot.png
vignettes/plot-comparisons.R vignettes/plot-comparisons.Rmd
vignettes/plot-comparisons.html
vignettes/pointsplot.png
vignettes/pointsplot2.png
vignettes/rwty.R vignettes/rwty.Rmd
vignettes/rwty.html
vignettes/sliding.posterior.png
vignettes/sliding.single.png
vignettes/splitfreq.matrix.png
vignettes/splitfreqs.cumulative.png
vignettes/splitfreqs.sliding.png
vignettes/topology.density.plot.png
vignettes/topology.plot.png
vignettes/topology.trace.plot.png
danlwarren/RWTY documentation built on Oct. 31, 2017, 7:36 a.m.