API for danlwarren/RWTY
R We There Yet? Visualizing MCMC Convergence in Phylogenetics
| Global functions | |
|---|---|
| add.names | Source code |
| analyze.rwty | Man page Source code |
| approx.ess.multi | Source code |
| approx.ess.single | Source code |
| check.chains | Man page Source code |
| clade.freq | Man page |
| combine.ptables | Man page Source code |
| cummean | Source code |
| cumulative.freq | Man page Source code |
| do.pairs.plot | Source code |
| estimate.autocorr.m | Man page Source code |
| fungus | Man page |
| get.acsf | Source code |
| get.asdsfs | Source code |
| get.comparison.table | Source code |
| get.cum.freq.table | Source code |
| get.dat.list.chain.names | Source code |
| get.format | Source code |
| get.processors | Source code |
| get.sequential.distances | Source code |
| get.slide.freq.table | Source code |
| get.wcsf | Source code |
| isTree | Source code |
| load.multi | Man page Source code |
| load.trees | Man page Source code |
| makeplot.acsf.cumulative | Man page Source code |
| makeplot.acsf.sliding | Man page Source code |
| makeplot.all.params | Man page Source code |
| makeplot.asdsf | Man page Source code |
| makeplot.autocorr | Man page Source code |
| makeplot.pairs | Man page Source code |
| makeplot.param | Man page Source code |
| makeplot.pseudo.ess | Man page Source code |
| makeplot.splitfreq.matrix | Man page Source code |
| makeplot.splitfreqs.cumulative | Man page Source code |
| makeplot.splitfreqs.sliding | Man page Source code |
| makeplot.topology | Man page Source code |
| makeplot.treespace | Man page Source code |
| panel.cor | Source code |
| parse.clades | Man page Source code |
| parse.slide.clades | Source code |
| path.distance | Source code |
| print.rwty.chain | Man page Source code |
| process.freq.table | Source code |
| read.revbayestrees | Source code |
| rf.dist | Source code |
| rf.dist.squared | Source code |
| rf.distance | Source code |
| rwty.params.check | Source code |
| salamanders | Man page |
| single.acsf.plot | Source code |
| single.splitfreq.plot | Source code |
| slide.freq | Man page Source code |
| topological.approx.ess | Man page Source code |
| topological.autocorr | Man page Source code |
| topological.pseudo.ess | Man page Source code |
| tree.autocorr | Source code |
| tree.dist.matrix | Man page Source code |
| tree.distances | Source code |
| tree.distances.from.first | Source code |
| tree.ess | Source code |
| tree.ess.multi | Source code |
| treespace | Man page Source code |
