API for danlwarren/RWTY
R We There Yet? Visualizing MCMC Convergence in Phylogenetics

Global functions
add.names Source code
analyze.rwty Man page Source code
approx.ess.multi Source code
approx.ess.single Source code
check.chains Man page Source code
clade.freq Man page
combine.ptables Man page Source code
cummean Source code
cumulative.freq Man page Source code
do.pairs.plot Source code
estimate.autocorr.m Man page Source code
fungus Man page
get.acsf Source code
get.asdsfs Source code
get.comparison.table Source code
get.cum.freq.table Source code
get.dat.list.chain.names Source code
get.format Source code
get.processors Source code
get.sequential.distances Source code
get.slide.freq.table Source code
get.wcsf Source code
isTree Source code
load.multi Man page Source code
load.trees Man page Source code
makeplot.acsf.cumulative Man page Source code
makeplot.acsf.sliding Man page Source code
makeplot.all.params Man page Source code
makeplot.asdsf Man page Source code
makeplot.autocorr Man page Source code
makeplot.pairs Man page Source code
makeplot.param Man page Source code
makeplot.pseudo.ess Man page Source code
makeplot.splitfreq.matrix Man page Source code
makeplot.splitfreqs.cumulative Man page Source code
makeplot.splitfreqs.sliding Man page Source code
makeplot.topology Man page Source code
makeplot.treespace Man page Source code
panel.cor Source code
parse.clades Man page Source code
path.distance Source code
print.rwty.chain Man page Source code
process.freq.table Source code
read.revbayestrees Source code
rf.dist Source code
rf.dist.squared Source code
rf.distance Source code
rwty.params.check Source code
salamanders Man page
single.acsf.plot Source code
single.splitfreq.plot Source code
slide.freq Man page Source code
topological.approx.ess Man page Source code
topological.autocorr Man page Source code
topological.pseudo.ess Man page Source code
tree.autocorr Source code
tree.dist.matrix Man page Source code
tree.distances Source code
tree.distances.from.first Source code
tree.ess Source code
tree.ess.multi Source code
treespace Man page Source code
danlwarren/RWTY documentation built on Nov. 7, 2019, 5:30 p.m.