match_phylo_comm: Match taxa and in phylogeny and community matrix
In darunabas/bioregion: an R package for mapping biodiversity and conservation
Description
Usage
Arguments
Details
Examples
Description
match_phylo_comm compares taxa (species, labels, tips) present in a phylogeny
with a community matrix. Pruning, sorting and trying to add missing species
on genus level if possible to match in subsequent analysis.
Usage
1
match_phylo_comm(phy, comm)
Arguments
phy
A phylogeny
comm
A (sparse) community data matrix
Details
Based on the function of the same name in picante but allows sparse matrices
and with taxa addition.
Examples
1
2
example(phylo_builder)
pc <- match_phylo_comm(tree, comm)
darunabas/bioregion documentation built on Oct. 27, 2019, 6:57 a.m.
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Description Usage Arguments Details Examples
Description
match_phylo_comm compares taxa (species, labels, tips) present in a phylogeny with a community matrix. Pruning, sorting and trying to add missing species on genus level if possible to match in subsequent analysis.
Usage
1 | match_phylo_comm(phy, comm)
|
Arguments
phy |
A phylogeny |
comm |
A (sparse) community data matrix |
Details
Based on the function of the same name in picante but allows sparse matrices and with taxa addition.
Examples
1 2 | example(phylo_builder)
pc <- match_phylo_comm(tree, comm)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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