Data Cloning and MCMC Tools for Maximum Likelihood Methods

bugs.fit | Fit BUGS models with cloned data |

bugs.parfit | Parallel computing with WinBUGS/OpenBUGS |

clusterSize | Optimizing the number of workers |

clusterSplitSB | Size balancing |

codaSamples | Generate posterior samples in mcmc.list format |

coef.mcmc.list | Methods for the 'mcmc.list' class |

dc.fit | Iterative model fitting with data cloning |

dcFit | Internal function for iterative model fitting with data... |

dclone | Cloning R objects |

DcloneEnv | Manipulating dclone environments |

dclone-package | Data Cloning |

dcoptions | Setting Options |

dc.parfit | Parallel model fitting with data cloning |

dctable | Retrieve descriptive statistics from fitted objects to... |

errlines | Plot error bars |

evalParallelArgument | Evaluates parallel argument |

jags.fit | Fit JAGS models with cloned data |

jagsModel | Create a JAGS model object |

jags.parfit | Parallel computing with JAGS |

lambdamax.diag | Data Cloning Diagnostics |

make.symmetric | Make a square matrix symmetric by averaging. |

mclapplySB | Size balancing version of mclapply |

mcmcapply | Calculations on 'mcmc.list' objects |

nclones | Number of Clones |

ovenbird | Abundances of ovenbird in Alberta |

pairs.mcmc.list | Scatterplot Matrices for 'mcmc.list' Objects |

parallel.inits | Parallel RNGs for initial values |

parCodaSamples | Generate posterior samples in 'mcmc.list' format on parallel... |

parDosa | Parallel wrapper function to call from within a function |

parJagsModel | Create a JAGS model object on parallel workers |

parLoadModule | Dynamically load JAGS modules on parallel workers |

parSetFactory | Advanced control over JAGS on parallel workers |

parUpdate | Update jags models on parallel workers |

regmod | Exemplary MCMC list object |

stan.fit | Fit Stan models with cloned data |

update.mcmc.list | Automatic updating of an MCMC object from JAGS |

write.jags.model | Write and remove model file |

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